Ch 10 Molecular Biology of the Gene

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Which of the following build(s) new strands of DNA?

DNA polymerases

Which statement about DNA replication is CORRECT?

The leading strand is built continuously, and the lagging strand is built in pieces.

The molecule that seals the gaps between the pieces of DNA in the lagging strand is

DNA ligase.

Which of the following events occurs during transcription?

A molecule of RNA is formed based on the sequence of nucleotides in DNA.

mRNA?

mRNA moves from the nucleus to the cytoplasm following RNA processing.

The site of translation is

ribosomes in the cell cytoplasm.

does not play a role in translation?

dna

Virus

not considered to be alive, studied alongside other microbes such as bacteria

Capsid

the protein coat that surrounds the nucleic acid of a virus

lytic cycle

a viral life cycle that results in bursting of the host cell

lysogenic cycle

a viral life cycle in which the virus inserts its genome into the genome of its host, where it may remain dormant for long periods.

Prophage

a viral genome that has inserted itself into the genome of its host

Bacteriophage

a virus that specifically infects bacteria.

In DNA, one nucleotide monomer is linked to the next through _____.

covalent bonds between the sugar of one nucleotide and the phosphate of the next

During replication, the original "parent" DNA _____.

serves as the template for the creation of two complete sets of DNA

central dogma follows the flow of information from _____.

DNA to protein

DNA carries out two basic functions in cells: (1) information storage and transfer (genes can be copied and passed to offspring) and (2) the "blueprint" function (genes provide instructions for building proteins). The key process for information storage and transfer to offspring cells is _____.

DNA replication

A gene is a sequence of DNA nucleotide bases that codes for a single protein. Approximately how many nucleotide bases would be required to code for a protein chain that is 100 amino acids long?

300

tRNA molecules work to _____.

translate mRNA to produce a specific amino acid sequence

In transcription, _____.

RNA polymerase links nucleotides to form mRNA.

An anticodon is _____.

a set of triplet bases that is complementary to a codon triplet on mRNA

If protein production were an assembly line, a ribosome would be _____.

the worker who puts all of the pieces together

At the start of translation, where does the initiator tRNA bind?

start codon on the mRNA molecule

The translation process in eukaryotes requires all of the following: _____.

transfer RNA, ribosomes, AUG codons

nucleotides

that nucleic acids are polymers of subunits

two main kinds of nucleic acids

1) DNA stores genetic information. 2) RNA transmits genetic information

Nucleotide Structure

Each nucleotide consists of: a 5-carbon sugar a phosphate group a nitrogenous base

DNA nucleotide consists of

a phosphate group, a 5-carbon sugar called deoxyribose, and one of four nitrogenous bases: Adenine Guanine Cytosine Thymine

RNA nucleotide consists of

a phosphate group, a 5-carbon sugar called ribose, and one of four nitrogenous bases: Adenine Guanine Cytosine Uracil

pyrimidines.

single-ring structures Thymine, cytosine, and uracil

purines

double-ring structures Adenine and guanine

Structure of DNA

DNA is formed of not one, but two parallel polynucleotides. The sugar-phosphate backbones face each other, with the nitrogenous bases pairing up in the middle. The entire molecule then twists, to form a double helix, or "twisted ladder."

Origins of Replication

DNA replication does not proceed from one end of the DNA molecule to the other. DNA replication occurs at many places along the molecule at the same time.

Direction of Replication

Recall that the two DNA strands are oriented in opposite directions. Each strand has a 3′ end and a 5′ end (referring to the number of the carbon on the 5-carbon sugar).

DNA polymerases

enzymes that link the nucleotides together in replication

DNA ligase

An enzyme, essential for DNA Replication, catalyzes the covalent bonding of adjacent DNA polynucleotides strands. It "stiches" DNA together.

Accuracy of Replication

DNA replication is amazingly accurate, but mistakes do occur. Sometimes in base-pairing, the wrong nucleotide is added. Sometimes DNA is damaged by toxic chemicals or by radiation such as ultraviolet light

T A C G

A T G C

Structure of RNA

Like DNA, an RNA molecule consists of nitrogenous bases extending out from a sugar-phosphate backbone. Unlike DNA, RNA is a single-stranded molecule.

RNA’s function

to transmit genetic information,by: Copying DNA (transcription) Turning the information into protein (translation)

Messenger RNA (mRNA)

copies the genetic code on DNA during transcription, and takes it to the cytoplasm.

Ribosomal RNA (rRNA)

forms the ribosomes, which provide a site for the assembly of amino acids into a protein during translation.

Transfer RNA (tRNA)

brings the correct amino acids to the ribosome.

Transcription

In transcription, the information on one gene is copied by one strand of mRNA.

RNA polymerase

base-pairs nucleotides to form the mRNA strand.

A Brief Recap

One gene codes for one protein. The code is copied by messenger RNA. The strand of mRNA leaves the nucleus via the nuclear pores, to be translated into a protein.

The Genetic Code

The sequence of nucleotides in DNA contains the code that directs the order of amino acids in a protein. The genetic code is read in groups of three nucleotides. Each group of three is called a codon. Each codon codes for a specific amino acid.

Another Recap!

One strand of the DNA molecule is transcribed to mRNA by complementary base-pairing. The sequence of codons for a protein begins with the start codon and ends with a stop codon. The protein begins with methionine Then AAG codes for lysine, then UUU codes for phenylalanine. The stop codon indicates that the protein has been completely assembled.

Exons

coding regions of a gene that are actually "expressed," or translated into amino acids.

Introns

Introns, or "intervening sequences," are non-coding regions between exons. These are sometimes called "junk DNA."

RNA "Processing"

Before leaving the nucleus as mRNA, the transcript must undergo modification. Eukaryotic cells are able to edit out introns, and "cut and paste" exons, splicing them together and changing the sequence of nucleotides. RNA splicing of exons enables the cell to produce different kinds of polypeptides from a single gene.

Translation

In the cytoplasm, the codons on mRNA are deciphered and amino acids are assembled to make a protein.

Translation requires:

1) A strand of mRNA 2) Transfer RNA (tRNA) to read the code on mRNA and bring the correct amino acid. 3) Ribosomes (rRNA) to assemble the amino acids.

Initiation

When the mRNA molecule arrives in the cytoplasm, it binds to the binding site on the small subunit of the ribosome. The anticodon of the first tRNA (the "initiator") binds to the start codon, bringing methionine as the first amino acid in the protein.

Elongation

Once initiation is complete, amino acids are added one by one to the first amino acid.

Elongation three-step process.

1) Codon recognition 2) Peptide bond formation 3) Translocation

Gene Mutations

Recall that a chromosome mutation is a change in the number or the structure of an entire chromosome, and can often be detected visually with a karyotype.

gene mutation

a change in the nucleotide sequence of DNA, affecting single genes.

Viruses

non-living intracellular parasites. doesn’t have a metabolism.

A virus is a tiny packet of nucleic acid

"programmed" to invade a living cell and hold it hostage

The virus works by

forcing the host cell to synthesize viral components rather than its own proteins, essentially turning the cell into a "virus factory."

capsid

The outer covering of a virus constructed of individual protein subunits, surrounds a core of nucleic acid

lytic cycle

destroys the host cell.

The lysogenic cycle

allows the host cell to also carry on its own business—at least for awhile.

Lytic Cycle

1. Phage attaches to cell Phage DNA 2. Phage injects DNA 3. Phage DNA circularizes 4. New phage DNA and proteins are synthesized 5. Phages assemble 6. Cell lyses realeasing phages.

Lysogenic cycle

After step three splits off 1.Phage DNA inserts into the bacterial chromosome by recombination. 2.Lysogenic bacterium reproduce normally, replicating the phophage at each cell division 3. Goes back into lytic cycle

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